apollo.gui.detailviewers.sequencealigner.actions
Class SequenceEditAction

java.lang.Object
  javax.swing.AbstractAction
      apollo.gui.detailviewers.sequencealigner.actions.SequenceEditAction

All Implemented Interfaces:

java.awt.event.ActionListener, java.io.Serializable, java.lang.Cloneable, java.util.EventListener, javax.swing.Action

public class SequenceEditAction
extends javax.swing.AbstractAction

An Action class for creating a single base sequence edit. The types of edits allowed are: SequenceI.INSERTION SequenceI.DELETION SequenceI.SUBSTITUTION SequenceI.CLEAR_EDIT

See Also:

Serialized Form

Field Summary

Fields inherited from class javax.swing.AbstractAction

changeSupport, enabled

Fields inherited from interface javax.swing.Action

ACCELERATOR_KEY, ACTION_COMMAND_KEY, DEFAULT, LONG_DESCRIPTION, MNEMONIC_KEY, NAME, SHORT_DESCRIPTION, SMALL_ICON

Constructor Summary

SequenceEditAction(java.lang.String name, GuiCurationState curationState, AnnotationEditor annotationEditor)
Constructor

SequenceEditAction(java.lang.String name, GuiCurationState curationState, AnnotationEditor annotationEditor, java.lang.String type)
Constructor

Method Summary

void	actionPerformed(java.awt.event.ActionEvent e) Performs the sequence edit
void	setFeature(SeqFeatureI feature) Sets the feature to be edited
void	setParent(javax.swing.JComponent parent) Sets the parent component for the dialog box that pops up
void	setSelectedBasePair(int basepair) Sets the base pair to be edited
void	setType(java.lang.String type) Sets the type of edit which will happen Should be one of: SequenceI.INSERTION SequenceI.DELETION SequenceI.SUBSTITUTION SequenceI.CLEAR_EDIT

Methods inherited from class javax.swing.AbstractAction

addPropertyChangeListener, clone, firePropertyChange, getKeys, getPropertyChangeListeners, getValue, isEnabled, putValue, removePropertyChangeListener, setEnabled

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SequenceEditAction

public SequenceEditAction(java.lang.String name,
                          GuiCurationState curationState,
                          AnnotationEditor annotationEditor)

Constructor

Parameters:

name - the name of this action

curationState - the curation state

annotationEditor - the annotation editor

SequenceEditAction

public SequenceEditAction(java.lang.String name,
                          GuiCurationState curationState,
                          AnnotationEditor annotationEditor,
                          java.lang.String type)

Constructor

Parameters:

name - the name of this action

curationState - the curation state

annotationEditor - the annotation editor

type - the type of sequence edit this action will perform

Method Detail

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent e)

Performs the sequence edit

setFeature

public void setFeature(SeqFeatureI feature)

Sets the feature to be edited

Parameters:

feature -

setSelectedBasePair

public void setSelectedBasePair(int basepair)

Sets the base pair to be edited

Parameters:

basepair - NOTE: does this have to be within an exon region of a feature? I don't think so

setType

public void setType(java.lang.String type)

Sets the type of edit which will happen Should be one of: SequenceI.INSERTION SequenceI.DELETION SequenceI.SUBSTITUTION SequenceI.CLEAR_EDIT

Parameters:

type -

setParent

public void setParent(javax.swing.JComponent parent)

Sets the parent component for the dialog box that pops up

Parameters:

parent -