apollo.gui.annotinfo
Class FeatureEditPanel

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  apollo.gui.annotinfo.FeatureEditPanel

All Implemented Interfaces:

java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, javax.accessibility.Accessible

Direct Known Subclasses:

GeneEditPanel

public abstract class FeatureEditPanel
extends javax.swing.JPanel

A JPanel to display Transcript & Gene info. Used by FeatureEditorDialog. Fields disabled if read only. No CommentEditPanel if read only (transcript comments show up in FeatureEditPanel's panel) superclass of GeneEditPanel and TranscriptEditPanel has all the stuff that is in both - like synonyms

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

javax.swing.JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

protected FeatureEditorDialog	featureEditorDialog
protected boolean	goodUser
protected boolean	isReadOnly
protected static org.apache.log4j.Logger	logger
protected int	row

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Method Summary

protected void	addField(javax.swing.JComponent left, java.awt.Component right)
protected void	addField(java.lang.String label_text, java.awt.Component c)
protected void	addFieldsPanelBottomGlue() pad out bottom of fields panel, for layout - otherwise syns can get huge
protected void	addIsProblematicCheckbox()
protected void	addSynonymGui()
protected void	checkFocusDrivenEdits() Focus driven edits occur in textboxes -> synonyms, names, and ids.
protected ChangeList	createChangeList()
protected void	errorPopup(java.lang.String err)
protected void	fireAnnotEvent(AnnotationChangeEvent ace)
protected java.awt.Color	getBackgroundColor()
protected AnnotatedFeatureI	getEditedFeature()
protected javax.swing.Box	getFeatureBox()
protected FeatureEditorDialog	getFeatureEditorDialog()
protected javax.swing.JPanel	getFieldsPanel()
protected java.lang.String	getGuiName()
protected java.lang.String	getModelName()
protected ApolloNameAdapterI	getNameAdapter()
protected apollo.gui.annotinfo.ReadWriteField	getNameField()
protected Style	getStyle()
protected javax.swing.JLabel	initLabel(java.lang.String text)
protected void	isGoodUser()
protected void	jbInit()
protected void	loadAnnotation(AnnotatedFeatureI feature) features is set to in, which is used for the JList.
protected abstract void	loadSelectedFeature()
protected void	loadSynonymGui()
protected AnnotationUpdateEvent	makeUpdateEvent(AnnotatedFeatureI a, TransactionSubpart ts)
protected AnnotationUpdateEvent	makeUpdateEvent(TransactionSubpart ts)
protected boolean	nameHasChanged()
protected void	setBooleanSubpart(boolean guiState, TransactionSubpart ts) If guiState is different than getEditedFeatures prop state as dictated by trueString and falseString, set editedFeat with new value and fire event special stuff for props that are method calls: IS_PROBLEMATIC
protected void	setGuiName(java.lang.String name)
protected void	setGuiNameFromModel()
protected void	setupSynButton(javax.swing.JButton synBut)
protected static java.lang.String	trimFirstAndLast(java.lang.String in) cuts the first and last character off a string

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

logger

protected static final org.apache.log4j.Logger logger

featureEditorDialog

protected FeatureEditorDialog featureEditorDialog

goodUser

protected boolean goodUser

isReadOnly

protected boolean isReadOnly

row

protected int row

Method Detail

getFeatureEditorDialog

protected FeatureEditorDialog getFeatureEditorDialog()

loadAnnotation

protected void loadAnnotation(AnnotatedFeatureI feature)

features is set to in, which is used for the JList. feature is set selected. Also checks for & commits edits in focus driven editors (syn,name,id)

isGoodUser

protected void isGoodUser()

checkFocusDrivenEdits

protected void checkFocusDrivenEdits()

Focus driven edits occur in textboxes -> synonyms, names, and ids. If the user selects a new annot in annot tree the focus event comes too late AFTER the loading of new annot, so this checks for edits before loadAnnotation sets the new annotation in place. this just checks syns, gene & trans panels override to check name & ids.

getEditedFeature

protected AnnotatedFeatureI getEditedFeature()

getNameAdapter

protected ApolloNameAdapterI getNameAdapter()

jbInit

protected void jbInit()

getFeatureBox

protected javax.swing.Box getFeatureBox()

addIsProblematicCheckbox

protected void addIsProblematicCheckbox()

getFieldsPanel

protected javax.swing.JPanel getFieldsPanel()

addFieldsPanelBottomGlue

protected void addFieldsPanelBottomGlue()

pad out bottom of fields panel, for layout - otherwise syns can get huge

addField

protected void addField(java.lang.String label_text,
                        java.awt.Component c)

addField

protected void addField(javax.swing.JComponent left,
                        java.awt.Component right)

getNameField

protected apollo.gui.annotinfo.ReadWriteField getNameField()

getGuiName

protected java.lang.String getGuiName()

setGuiName

protected void setGuiName(java.lang.String name)

getModelName

protected java.lang.String getModelName()

setGuiNameFromModel

protected void setGuiNameFromModel()

nameHasChanged

protected boolean nameHasChanged()

initLabel

protected javax.swing.JLabel initLabel(java.lang.String text)

trimFirstAndLast

protected static java.lang.String trimFirstAndLast(java.lang.String in)

cuts the first and last character off a string

getBackgroundColor

protected java.awt.Color getBackgroundColor()

loadSelectedFeature

protected abstract void loadSelectedFeature()

fireAnnotEvent

protected void fireAnnotEvent(AnnotationChangeEvent ace)

setBooleanSubpart

protected void setBooleanSubpart(boolean guiState,
                                 TransactionSubpart ts)

If guiState is different than getEditedFeatures prop state as dictated by trueString and falseString, set editedFeat with new value and fire event special stuff for props that are method calls: IS_PROBLEMATIC

makeUpdateEvent

protected AnnotationUpdateEvent makeUpdateEvent(TransactionSubpart ts)

makeUpdateEvent

protected AnnotationUpdateEvent makeUpdateEvent(AnnotatedFeatureI a,
                                                TransactionSubpart ts)

errorPopup

protected void errorPopup(java.lang.String err)

createChangeList

protected ChangeList createChangeList()

getStyle

protected Style getStyle()

addSynonymGui

protected void addSynonymGui()

setupSynButton

protected void setupSynButton(javax.swing.JButton synBut)

loadSynonymGui

protected void loadSynonymGui()