apollo.editor
Class UpdateTransaction

java.lang.Object
  apollo.editor.Transaction
      apollo.editor.UpdateTransaction

All Implemented Interfaces:

java.io.Serializable

public class UpdateTransaction
extends Transaction

Transaction class for updating.

Author:

wgm

See Also:

Serialized Form

Field Summary

protected static org.apache.log4j.Logger

logger

Fields inherited from class apollo.editor.Transaction

author, date, NEW, newProperties, OLD, oldProperties

Constructor Summary

UpdateTransaction()

UpdateTransaction(java.lang.Object source, SeqFeatureI feat, TransactionSubpart ts, java.lang.Object oldValue, java.lang.Object newValue)

UpdateTransaction(SeqFeatureI feature, TransactionSubpart part)
An overloaded constructor

UpdateTransaction(SeqFeatureI feat, TransactionSubpart ts, java.lang.Object oldValue, java.lang.Object newValue)

Method Summary

void	editModel()
protected java.lang.String	getOperationString()
SeqFeatureI	getUpdatedSeqFeature() Get the updated SeqFeatureI
SeqFeatureI	getUpdatedSeqFeatureClone()
boolean	isUpdate()
java.lang.String	oneLineSummary() Short (one-line) summary of the object; concise alternative to toString() that displays every instance variable set in one of the constructors, plus date and author.
void	setNameAdapter(ApolloNameAdapterI nameAdapter) This is to undo id changes (caused by type change at the moment).

Methods inherited from class apollo.editor.Transaction

addProperty, generateAnnotationChangeEvent, generateUndoChangeEvent, getAuthor, getClassString, getDate, getDeletedFeature, getLeafTransactions, getNewId, getNewSplitFeature, getNewSubpartValue, getObjectClass, getOldComment, getOldId, getOldString, getOldSubpartValue, getOperation, getParentFeature, getParentFeatureClone, getParentTransaction, getProperty, getRank, getSeqFeature, getSeqFeatureClone, getSubpart, getSubpartRank, getSubpartString, getTransaction, hasKids, hasParentTransaction, isAdd, isAddPeptide, isCompound, isDelete, isMerge, isSplit, isUpdateParent, setAuthor, setDate, setDate, setNewId, setNewSubpartValue, setObjectClass, setOldId, setOldSubpartValue, setOperation, setOperation, setParentFeature, setRank, setSeqFeature, setSource, setSubpart, setSubpartRank, size, subpartIsString, toString, toString, updateClonedTranscriptIdsAndNames

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

logger

protected static final org.apache.log4j.Logger logger

Constructor Detail

UpdateTransaction

public UpdateTransaction()

UpdateTransaction

public UpdateTransaction(SeqFeatureI feature,
                         TransactionSubpart part)

An overloaded constructor

Parameters:

feature - the updated SeqFeatureI object

part - the updated part (It is more like a name thing, not the actual value) - phase this constructor out for the other one?

UpdateTransaction

public UpdateTransaction(SeqFeatureI feat,
                         TransactionSubpart ts,
                         java.lang.Object oldValue,
                         java.lang.Object newValue)

UpdateTransaction

public UpdateTransaction(java.lang.Object source,
                         SeqFeatureI feat,
                         TransactionSubpart ts,
                         java.lang.Object oldValue,
                         java.lang.Object newValue)

Method Detail

getUpdatedSeqFeature

public SeqFeatureI getUpdatedSeqFeature()

Get the updated SeqFeatureI

Returns:

getUpdatedSeqFeatureClone

public SeqFeatureI getUpdatedSeqFeatureClone()

isUpdate

public boolean isUpdate()

Overrides:

isUpdate in class Transaction

editModel

public void editModel()

setNameAdapter

public void setNameAdapter(ApolloNameAdapterI nameAdapter)

This is to undo id changes (caused by type change at the moment). all the id changes dont get transmitted so need name adapter to do all of the id changes needed. at some point this should be ammended where all the id & name changes do get sent out as transactions. this will do for now.

getOperationString

protected java.lang.String getOperationString()

Overrides:

getOperationString in class Transaction

oneLineSummary

public java.lang.String oneLineSummary()

Short (one-line) summary of the object; concise alternative to toString() that displays every instance variable set in one of the constructors, plus date and author.

Overrides:

oneLineSummary in class Transaction