apollo.datamodel.seq
Interface LazySequenceI

All Superinterfaces:

SequenceI, java.io.Serializable

All Known Implementing Classes:

AbstractLazySequence, AlternateEnsJSequence, AlternateEnsJSequence, DASLazySequence, DebugLazySequence, EnsCGISequence, EnsJSequence, GAMESequence, PFetchSequence, SRSSequence

public interface LazySequenceI
extends SequenceI

Field Summary

Fields inherited from interface apollo.datamodel.SequenceI

AA, CLEAR_EDIT, DELETION, DNA, INSERTION, RNA, SUBSTITUTION

Method Summary

java.lang.String

getResiduesFromSource(int low, int high)

Methods inherited from interface apollo.datamodel.SequenceI

addDbXref, addDbXref, addDbXref, addSequenceEdit, addSequencingErrorPosition, clearResidues, getAccessionNo, getBaseAt, getChecksum, getDbXrefs, getDescription, getFrame, getGenomicErrors, getLength, getName, getOrganism, getRange, getResidues, getResidues, getResidueType, getReverseComplement, getSequencingErrorAtPosition, getSubSequence, hasName, hasResidues, hasResidueType, isAA, isLazy, isSequenceAvailable, isSequencingErrorPosition, removeSequenceEdit, setAccessionNo, setChecksum, setDate, setDescription, setLength, setName, setOrganism, setRange, setResidues, setResidueType, usesGenomicCoords

Method Detail

getResiduesFromSource

java.lang.String getResiduesFromSource(int low,
                                       int high)