apollo.dataadapter.otter.parser
Class EvidenceTagHandler

java.lang.Object
  apollo.dataadapter.otter.parser.TagHandler
      apollo.dataadapter.otter.parser.EvidenceTagHandler

public class EvidenceTagHandler
extends TagHandler

I will create a new Evidence element when my tag is found. When I am closed, I will add it to the current Transcript.

Field Summary

Fields inherited from class apollo.dataadapter.otter.parser.TagHandler

ACCESSION, ASSEMBLY_END, ASSEMBLY_START, ASSEMBLY_TYPE, AUTHOR, AUTHOR_EMAIL, CDS_END_NOT_FOUND, CDS_START_NOT_FOUND, CHROMOSOME, END, EVIDENCE, EXON, FRAGMENT_OFFSET, FRAGMENT_ORI, FRAME, ID, INDENT, KEYWORD, KNOWN, LEFT, LOCUS, LOCUS_TYPE, MRNA_END_NOT_FOUND, MRNA_START_NOT_FOUND, NAME, OTTER, REMARK, RETURN, RIGHT, SEQUENCE_FRAGMENT, SEQUENCE_SET, SLASH, STABLE_ID, START, STRAND, SYNONYM, TRANSCRIPT, TRANSCRIPT_CLASS, TRANSLATION_END, TRANSLATION_STABLE_ID, TRANSLATION_START, TYPE, VERSION

Constructor Summary

EvidenceTagHandler()

Method Summary

java.lang.String	getFullName()
java.lang.String	getLeafName()
void	handleEndElement(OtterContentHandler theContentHandler, java.lang.String namespaceURI, java.lang.String localName, java.lang.String qualifiedName)
void	handleStartElement(OtterContentHandler theContentHandler, java.lang.String namespaceURI, java.lang.String localName, java.lang.String qualifiedName, org.xml.sax.Attributes attributes)

Methods inherited from class apollo.dataadapter.otter.parser.TagHandler

appendCharacterBuffer, getCharacterBuffer, getCharacters, handleCharacters, setCharacterBuffer

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

EvidenceTagHandler

public EvidenceTagHandler()

Method Detail

handleStartElement

public void handleStartElement(OtterContentHandler theContentHandler,
                               java.lang.String namespaceURI,
                               java.lang.String localName,
                               java.lang.String qualifiedName,
                               org.xml.sax.Attributes attributes)

Overrides:

handleStartElement in class TagHandler

handleEndElement

public void handleEndElement(OtterContentHandler theContentHandler,
                             java.lang.String namespaceURI,
                             java.lang.String localName,
                             java.lang.String qualifiedName)

Overrides:

handleEndElement in class TagHandler

getFullName

public java.lang.String getFullName()

Specified by:

getFullName in class TagHandler

getLeafName

public java.lang.String getLeafName()

Specified by:

getLeafName in class TagHandler