apollo.dataadapter.genbank
Class GenbankRead

java.lang.Object
  apollo.dataadapter.genbank.GenbankRead

public class GenbankRead
extends java.lang.Object

Field Summary

protected static org.apache.log4j.Logger

logger

Constructor Summary

GenbankRead()

Method Summary

boolean	areSameLocation(SeqFeatureI sa, SeqFeatureI sb)
int	getLineType(java.lang.String line) Return the embl line type of the line contained in the argument String.
boolean	loadCurationSet(CurationSet curation, java.io.BufferedReader input)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

logger

protected static final org.apache.log4j.Logger logger

Constructor Detail

GenbankRead

public GenbankRead()

Method Detail

loadCurationSet

public boolean loadCurationSet(CurationSet curation,
                               java.io.BufferedReader input)

getLineType

public int getLineType(java.lang.String line)

Return the embl line type of the line contained in the argument String.

areSameLocation

public boolean areSameLocation(SeqFeatureI sa,
                               SeqFeatureI sb)