apollo.dataadapter.gbrowse
Class FeatureAdaptor

java.lang.Object
  apollo.dataadapter.mysql.BaseAdaptor
      apollo.dataadapter.gbrowse.FeatureAdaptor

public class FeatureAdaptor
extends BaseAdaptor

Field Summary

Fields inherited from class apollo.dataadapter.mysql.BaseAdaptor

db

Constructor Summary

FeatureAdaptor(MySQLDatabase db)

Method Summary

FeatureSetI	fetchByReferenceStartEnd(java.lang.String ref, int start, int end)
static void	main(java.lang.String[] args)
void	printGFF(SeqFeatureI sf)
SeqFeatureI	seqFeatureFromResultSet(java.sql.ResultSet rs, java.util.Hashtable groups)

Methods inherited from class apollo.dataadapter.mysql.BaseAdaptor

getDatabase, setDatabase

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FeatureAdaptor

public FeatureAdaptor(MySQLDatabase db)

Method Detail

fetchByReferenceStartEnd

public FeatureSetI fetchByReferenceStartEnd(java.lang.String ref,
                                            int start,
                                            int end)

seqFeatureFromResultSet

public SeqFeatureI seqFeatureFromResultSet(java.sql.ResultSet rs,
                                           java.util.Hashtable groups)
                                    throws java.sql.SQLException

Throws:

java.sql.SQLException

printGFF

public void printGFF(SeqFeatureI sf)

main

public static void main(java.lang.String[] args)