apollo.dataadapter.ensj.model
Class TypesModel

java.lang.Object
  apollo.dataadapter.ensj.model.TypesModel

public class TypesModel
extends java.lang.Object

Field Summary

static java.lang.String	ABINITIO
static java.lang.String	DITAGFEATURE
static java.lang.String	DNADNA
static java.lang.String	DNAPROTEIN
static java.lang.String	GENE
static java.lang.String	NONE
static java.lang.String	SIMPLEFEATURE
static java.lang.String	SIMPLEPEPTIDE

Constructor Summary

TypesModel()

Method Summary

java.lang.String	getAbInitioPredictionCount()
java.util.HashMap	getAbInitioTypeCounts()
java.lang.String	getContigCount()
java.lang.String	getDitagFeatureCount()
java.util.HashMap	getDitagFeatureTypeCounts()
java.util.List	getDitagFeatureTypes()
java.lang.String	getDnaDnaAlignmentCount()
java.util.HashMap	getDnaDnaAlignmentTypeCounts()
java.util.List	getDnaDnaAlignTypes()
java.lang.String	getDnaProteinAlignmentCount()
java.util.HashMap	getDnaProteinAlignmentTypeCounts()
java.util.List	getDnaProteinAlignTypes()
java.lang.String	getGeneCount()
java.util.HashMap	getGeneTypeCounts()
java.util.List	getGeneTypes()
java.util.List	getPredictionTypes()
java.lang.String	getProteinAnnotationCount()
java.lang.String	getRepeatCount()
java.util.List	getSelectedDitagFeatureTypes()
java.util.List	getSelectedDnaDnaAlignTypes()
java.util.List	getSelectedDnaProteinAlignTypes()
java.util.List	getSelectedGeneTypes()
java.util.List	getSelectedPredictionTypes()
java.util.List	getSelectedSimpleFeatureTypes()
java.lang.String	getSimpleFeatureCount()
java.util.HashMap	getSimpleFeatureTypeCounts()
java.util.List	getSimpleFeatureTypes()
java.util.HashMap	getSimplePeptideTypeCounts()
java.lang.String	getTypePanelToShow()
java.lang.String	includeAbInitioPredictions()
java.lang.String	includeContigs()
java.lang.String	includeDitagFeatures()
java.lang.String	includeDnaDnaAlignments()
java.lang.String	includeDnaProteinAlignments()
java.lang.String	includeGenes()
java.lang.String	includeProteinAnnotations()
java.lang.String	includeRepeats()
java.lang.String	includeSimpleFeatures()
java.lang.String	includeVariations()
boolean	isAbInitioTypeCountInitialised()
boolean	isDitagFeatureTypeCountInitialised()
boolean	isDnaDnaAlignmentTypeCountInitialised()
boolean	isDnaProteinAlignmentTypeCountInitialised()
boolean	isGeneTypeCountInitialised()
boolean	isSimpleFeatureTypeCountInitialised()
boolean	isSimplePeptideTypeCountInitialised()
void	setAbInitioPredictionCount(java.lang.String newValue)
void	setAbInitioTypeCountInitialised(boolean value)
void	setAbInitioTypeCounts(java.util.HashMap value)
void	setContigCount(java.lang.String newValue)
void	setDitagFeatureCount(java.lang.String newValue)
void	setDitagFeatureTypeCountInitialised(boolean value)
void	setDitagFeatureTypeCounts(java.util.HashMap value)
void	setDitagFeatureTypes(java.util.List newValue)
void	setDnaDnaAlignmentCount(java.lang.String newValue)
void	setDnaDnaAlignmentTypeCountInitialised(boolean value)
void	setDnaDnaAlignmentTypeCounts(java.util.HashMap value)
void	setDnaDnaAlignTypes(java.util.List newValue)
void	setDnaProteinAlignmentCount(java.lang.String newValue)
void	setDnaProteinAlignmentTypeCountInitialised(boolean value)
void	setDnaProteinAlignmentTypeCounts(java.util.HashMap value)
void	setDnaProteinAlignTypes(java.util.List newValue)
void	setGeneCount(java.lang.String value)
void	setGeneTypeCountInitialised(boolean value)
void	setGeneTypeCounts(java.util.HashMap value)
void	setGeneTypes(java.util.List newValue)
void	setIncludeAbInitioPredictions(java.lang.String newValue)
void	setIncludeContigs(java.lang.String newValue)
void	setIncludeDitagFeatures(java.lang.String newValue)
void	setIncludeDnaDnaAlignments(java.lang.String newValue)
void	setIncludeDnaProteinAlignments(java.lang.String newValue)
void	setIncludeGenes(java.lang.String newValue)
void	setIncludeProteinAnnotations(java.lang.String newValue)
void	setIncludeRepeats(java.lang.String newValue)
void	setIncludeSimpleFeatures(java.lang.String newValue)
void	setIncludeVariations(java.lang.String newValue)
void	setPredictionTypes(java.util.List newValue)
void	setProteinAnnotationCount(java.lang.String newValue)
void	setRepeatCount(java.lang.String newValue)
void	setSelectedDitagFeatureTypes(java.util.List newValue)
void	setSelectedDnaDnaAlignTypes(java.util.List newValue)
void	setSelectedDnaProteinAlignTypes(java.util.List newValue)
void	setSelectedGeneTypes(java.util.List newValue)
void	setSelectedPredictionTypes(java.util.List newValue)
void	setSelectedSimpleFeatureTypes(java.util.List newValue)
void	setSimpleFeatureCount(java.lang.String newValue)
void	setSimpleFeatureTypeCountInitialised(boolean value)
void	setSimpleFeatureTypeCounts(java.util.HashMap value)
void	setSimpleFeatureTypes(java.util.List newValue)
void	setSimplePeptideTypeCountInitialised(boolean value)
void	setSimplePeptideTypeCounts(java.util.HashMap value)
void	setTypePanelToShow(java.lang.String value)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

NONE

public static final java.lang.String NONE

See Also:

Constant Field Values

GENE

public static final java.lang.String GENE

See Also:

Constant Field Values

DNAPROTEIN

public static final java.lang.String DNAPROTEIN

See Also:

Constant Field Values

DNADNA

public static final java.lang.String DNADNA

See Also:

Constant Field Values

SIMPLEFEATURE

public static final java.lang.String SIMPLEFEATURE

See Also:

Constant Field Values

ABINITIO

public static final java.lang.String ABINITIO

See Also:

Constant Field Values

SIMPLEPEPTIDE

public static final java.lang.String SIMPLEPEPTIDE

See Also:

Constant Field Values

DITAGFEATURE

public static final java.lang.String DITAGFEATURE

See Also:

Constant Field Values

Constructor Detail

TypesModel

public TypesModel()

Method Detail

includeGenes

public java.lang.String includeGenes()

setIncludeGenes

public void setIncludeGenes(java.lang.String newValue)

getGeneCount

public java.lang.String getGeneCount()

setGeneCount

public void setGeneCount(java.lang.String value)

includeDnaProteinAlignments

public java.lang.String includeDnaProteinAlignments()

setIncludeDnaProteinAlignments

public void setIncludeDnaProteinAlignments(java.lang.String newValue)

setDnaProteinAlignmentCount

public void setDnaProteinAlignmentCount(java.lang.String newValue)

getDnaProteinAlignmentCount

public java.lang.String getDnaProteinAlignmentCount()

includeDnaDnaAlignments

public java.lang.String includeDnaDnaAlignments()

setIncludeDnaDnaAlignments

public void setIncludeDnaDnaAlignments(java.lang.String newValue)

setDnaDnaAlignmentCount

public void setDnaDnaAlignmentCount(java.lang.String newValue)

getDnaDnaAlignmentCount

public java.lang.String getDnaDnaAlignmentCount()

includeSimpleFeatures

public java.lang.String includeSimpleFeatures()

setIncludeSimpleFeatures

public void setIncludeSimpleFeatures(java.lang.String newValue)

getSimpleFeatureCount

public java.lang.String getSimpleFeatureCount()

setSimpleFeatureCount

public void setSimpleFeatureCount(java.lang.String newValue)

includeDitagFeatures

public java.lang.String includeDitagFeatures()

setIncludeDitagFeatures

public void setIncludeDitagFeatures(java.lang.String newValue)

getDitagFeatureCount

public java.lang.String getDitagFeatureCount()

setDitagFeatureCount

public void setDitagFeatureCount(java.lang.String newValue)

includeProteinAnnotations

public java.lang.String includeProteinAnnotations()

setIncludeProteinAnnotations

public void setIncludeProteinAnnotations(java.lang.String newValue)

getProteinAnnotationCount

public java.lang.String getProteinAnnotationCount()

setProteinAnnotationCount

public void setProteinAnnotationCount(java.lang.String newValue)

includeRepeats

public java.lang.String includeRepeats()

setIncludeRepeats

public void setIncludeRepeats(java.lang.String newValue)

getRepeatCount

public java.lang.String getRepeatCount()

setRepeatCount

public void setRepeatCount(java.lang.String newValue)

includeContigs

public java.lang.String includeContigs()

setIncludeContigs

public void setIncludeContigs(java.lang.String newValue)

getContigCount

public java.lang.String getContigCount()

setContigCount

public void setContigCount(java.lang.String newValue)

includeAbInitioPredictions

public java.lang.String includeAbInitioPredictions()

setIncludeAbInitioPredictions

public void setIncludeAbInitioPredictions(java.lang.String newValue)

getAbInitioPredictionCount

public java.lang.String getAbInitioPredictionCount()

setAbInitioPredictionCount

public void setAbInitioPredictionCount(java.lang.String newValue)

includeVariations

public java.lang.String includeVariations()

setIncludeVariations

public void setIncludeVariations(java.lang.String newValue)

getGeneTypes

public java.util.List getGeneTypes()

setGeneTypes

public void setGeneTypes(java.util.List newValue)

getDnaProteinAlignTypes

public java.util.List getDnaProteinAlignTypes()

setDnaProteinAlignTypes

public void setDnaProteinAlignTypes(java.util.List newValue)

getDnaDnaAlignTypes

public java.util.List getDnaDnaAlignTypes()

setDnaDnaAlignTypes

public void setDnaDnaAlignTypes(java.util.List newValue)

getSimpleFeatureTypes

public java.util.List getSimpleFeatureTypes()

setSimpleFeatureTypes

public void setSimpleFeatureTypes(java.util.List newValue)

getDitagFeatureTypes

public java.util.List getDitagFeatureTypes()

setDitagFeatureTypes

public void setDitagFeatureTypes(java.util.List newValue)

getPredictionTypes

public java.util.List getPredictionTypes()

setPredictionTypes

public void setPredictionTypes(java.util.List newValue)

getSelectedGeneTypes

public java.util.List getSelectedGeneTypes()

setSelectedGeneTypes

public void setSelectedGeneTypes(java.util.List newValue)

getSelectedDnaProteinAlignTypes

public java.util.List getSelectedDnaProteinAlignTypes()

setSelectedDnaProteinAlignTypes

public void setSelectedDnaProteinAlignTypes(java.util.List newValue)

getSelectedDnaDnaAlignTypes

public java.util.List getSelectedDnaDnaAlignTypes()

setSelectedDnaDnaAlignTypes

public void setSelectedDnaDnaAlignTypes(java.util.List newValue)

getSelectedSimpleFeatureTypes

public java.util.List getSelectedSimpleFeatureTypes()

setSelectedSimpleFeatureTypes

public void setSelectedSimpleFeatureTypes(java.util.List newValue)

getSelectedDitagFeatureTypes

public java.util.List getSelectedDitagFeatureTypes()

setSelectedDitagFeatureTypes

public void setSelectedDitagFeatureTypes(java.util.List newValue)

getSelectedPredictionTypes

public java.util.List getSelectedPredictionTypes()

setSelectedPredictionTypes

public void setSelectedPredictionTypes(java.util.List newValue)

isGeneTypeCountInitialised

public boolean isGeneTypeCountInitialised()

setGeneTypeCountInitialised

public void setGeneTypeCountInitialised(boolean value)

isDnaProteinAlignmentTypeCountInitialised

public boolean isDnaProteinAlignmentTypeCountInitialised()

setDnaProteinAlignmentTypeCountInitialised

public void setDnaProteinAlignmentTypeCountInitialised(boolean value)

isDnaDnaAlignmentTypeCountInitialised

public boolean isDnaDnaAlignmentTypeCountInitialised()

setDnaDnaAlignmentTypeCountInitialised

public void setDnaDnaAlignmentTypeCountInitialised(boolean value)

isSimpleFeatureTypeCountInitialised

public boolean isSimpleFeatureTypeCountInitialised()

setSimpleFeatureTypeCountInitialised

public void setSimpleFeatureTypeCountInitialised(boolean value)

isDitagFeatureTypeCountInitialised

public boolean isDitagFeatureTypeCountInitialised()

setDitagFeatureTypeCountInitialised

public void setDitagFeatureTypeCountInitialised(boolean value)

isAbInitioTypeCountInitialised

public boolean isAbInitioTypeCountInitialised()

setAbInitioTypeCountInitialised

public void setAbInitioTypeCountInitialised(boolean value)

isSimplePeptideTypeCountInitialised

public boolean isSimplePeptideTypeCountInitialised()

setSimplePeptideTypeCountInitialised

public void setSimplePeptideTypeCountInitialised(boolean value)

getGeneTypeCounts

public java.util.HashMap getGeneTypeCounts()

setGeneTypeCounts

public void setGeneTypeCounts(java.util.HashMap value)

getDnaProteinAlignmentTypeCounts

public java.util.HashMap getDnaProteinAlignmentTypeCounts()

setDnaProteinAlignmentTypeCounts

public void setDnaProteinAlignmentTypeCounts(java.util.HashMap value)

getDnaDnaAlignmentTypeCounts

public java.util.HashMap getDnaDnaAlignmentTypeCounts()

setDnaDnaAlignmentTypeCounts

public void setDnaDnaAlignmentTypeCounts(java.util.HashMap value)

getSimpleFeatureTypeCounts

public java.util.HashMap getSimpleFeatureTypeCounts()

setSimpleFeatureTypeCounts

public void setSimpleFeatureTypeCounts(java.util.HashMap value)

getDitagFeatureTypeCounts

public java.util.HashMap getDitagFeatureTypeCounts()

setDitagFeatureTypeCounts

public void setDitagFeatureTypeCounts(java.util.HashMap value)

getAbInitioTypeCounts

public java.util.HashMap getAbInitioTypeCounts()

setAbInitioTypeCounts

public void setAbInitioTypeCounts(java.util.HashMap value)

getSimplePeptideTypeCounts

public java.util.HashMap getSimplePeptideTypeCounts()

setSimplePeptideTypeCounts

public void setSimplePeptideTypeCounts(java.util.HashMap value)

getTypePanelToShow

public java.lang.String getTypePanelToShow()

setTypePanelToShow

public void setTypePanelToShow(java.lang.String value)