apollo.dataadapter.ensj
Class EnsJFeatureSetBuilder

java.lang.Object
  apollo.dataadapter.FeatureSetBuilder
      apollo.dataadapter.ensj.EnsJFeatureSetBuilder

public class EnsJFeatureSetBuilder
extends FeatureSetBuilder

Field Summary

protected static org.apache.log4j.Logger

logger

Constructor Summary

EnsJFeatureSetBuilder()

Method Summary

protected void	buildFeaturesHash(java.util.Vector features, java.util.Hashtable plus_fhash, java.util.Hashtable minus_fhash)
void	makeHomolSets(StrandedFeatureSet fset, java.util.Hashtable id_hash, java.lang.String type, int strand)
java.util.Vector	splitHomols(java.util.Vector sf_vect, java.lang.String type, java.lang.String ref_id, int strand)

Methods inherited from class apollo.dataadapter.FeatureSetBuilder

buildFeatures, main, makeGeneSets, makeSetFeatures, makeSingSets

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

logger

protected static final org.apache.log4j.Logger logger

Constructor Detail

EnsJFeatureSetBuilder

public EnsJFeatureSetBuilder()

Method Detail

buildFeaturesHash

protected void buildFeaturesHash(java.util.Vector features,
                                 java.util.Hashtable plus_fhash,
                                 java.util.Hashtable minus_fhash)

Overrides:

buildFeaturesHash in class FeatureSetBuilder

makeHomolSets

public void makeHomolSets(StrandedFeatureSet fset,
                          java.util.Hashtable id_hash,
                          java.lang.String type,
                          int strand)

Overrides:

makeHomolSets in class FeatureSetBuilder

splitHomols

public java.util.Vector splitHomols(java.util.Vector sf_vect,
                                    java.lang.String type,
                                    java.lang.String ref_id,
                                    int strand)

Overrides:

splitHomols in class FeatureSetBuilder