apollo.dataadapter.das.simple
Class SimpleDASAdapterGUI

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  org.bdgp.swing.AbstractDataAdapterUI
                      apollo.dataadapter.das.simple.SimpleDASAdapterGUI

All Implemented Interfaces:

ApolloDataAdapterGUI, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, javax.accessibility.Accessible, org.bdgp.io.DataAdapterUI

public class SimpleDASAdapterGUI
extends org.bdgp.swing.AbstractDataAdapterUI
implements ApolloDataAdapterGUI

I implement a AbstractDataAdapterUI, allowing Apollo to get information from DAS datasources, using 'simple' implementions of DASServerI, DASDsn etc.

My whole reason-for-being is to have a das-reading adapter which doesn't rely on a big external codebase (e.g. omnigene or biojava): I create implementations of DASServerI, DASSegment etc which are 'simple' - SimpleDASServerI etc.

See Also:

Serialized Form

Nested Class Summary

class	SimpleDASAdapterGUI.DSNListener
class	SimpleDASAdapterGUI.HistoryListener
class	SimpleDASAdapterGUI.ProxyListener This listener gets fired when the user wants to set a Proxy Server for the session
class	SimpleDASAdapterGUI.ServerListener

Nested classes/interfaces inherited from class javax.swing.JPanel

javax.swing.JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

protected org.bdgp.io.DataAdapter	driver
protected SimpleDASAdapterGUI.DSNListener	dsn_listener
protected SimpleDASAdapterGUI.HistoryListener	history_listener
static int	MAX_HISTORY_LENGTH
protected org.bdgp.io.IOOperation	op
protected SimpleDASAdapterGUI.ServerListener	server_listener

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

SimpleDASAdapterGUI(org.bdgp.io.IOOperation op)

Method Summary

void	buildGUI()
java.util.Properties	createStateInformation()
java.lang.Object	doOperation(java.lang.Object values) The method that actually performs the data adapter operation (presumably by delegating to a data adapter).
java.util.Properties	getProperties() This must run after the server successfully finishes the doOperation() method - i.e.
DASDsn	getSelectedDSN() This returns an actual DASDsn - either the source id or the MapMaster attribute will give the URL of the annotated source.
java.lang.String	getSelectedHistory()
DASSegment	getSelectedSegment()
java.lang.String	getSelectedServer()
void	setDataAdapter(org.bdgp.io.DataAdapter driver) Sets the data adapter for this UI.
void	setFont(java.awt.Font font)
void	setProperties(java.util.Properties in) This gets called when Apollo starts up (and probabyl elsewhere as well) and is responsible for the initialisation of the listboxes.
protected void	setSelectedDSNWithId(java.lang.String id, java.util.Vector model, javax.swing.JComboBox list)
protected void	setSelectedSegmentWithId(java.lang.String id, java.util.Vector model, javax.swing.JComboBox list)
protected void	setSelection(java.lang.Object item, java.util.Vector model, javax.swing.JComboBox list) Sets the input model to be that of the list.
protected void	updateDSNs()
protected void	updateSegments()

Methods inherited from class org.bdgp.swing.AbstractDataAdapterUI

setInput

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

MAX_HISTORY_LENGTH

public static final int MAX_HISTORY_LENGTH

See Also:

Constant Field Values

driver

protected org.bdgp.io.DataAdapter driver

op

protected org.bdgp.io.IOOperation op

server_listener

protected SimpleDASAdapterGUI.ServerListener server_listener

dsn_listener

protected SimpleDASAdapterGUI.DSNListener dsn_listener

history_listener

protected SimpleDASAdapterGUI.HistoryListener history_listener

Constructor Detail

SimpleDASAdapterGUI

public SimpleDASAdapterGUI(org.bdgp.io.IOOperation op)

Method Detail

createStateInformation

public java.util.Properties createStateInformation()

Specified by:

createStateInformation in interface ApolloDataAdapterGUI

setProperties

public void setProperties(java.util.Properties in)

This gets called when Apollo starts up (and probabyl elsewhere as well) and is responsible for the initialisation of the listboxes.

Specified by:

setProperties in interface org.bdgp.io.DataAdapterUI

getProperties

public java.util.Properties getProperties()

This must run after the server successfully finishes the doOperation() method - i.e. after a successful read. Copy the data from the server,dsn,entry point and range into a string, insert into the history dropdown. Then copy the contents of both dropdowns into the properies file, which you return.

-- of course, you omit any "choose..." prompts in the dropdowns when copying into the properties files.

One nice side-effect of the timing of this method is that unsuccessful url's don't seem to get copied into the history.

Specified by:

getProperties in interface org.bdgp.io.DataAdapterUI

setFont

public void setFont(java.awt.Font font)

Overrides:

setFont in class javax.swing.JComponent

buildGUI

public void buildGUI()

setDataAdapter

public void setDataAdapter(org.bdgp.io.DataAdapter driver)

Description copied from interface: org.bdgp.io.DataAdapterUI

Sets the data adapter for this UI. Since the UI provides it's own implementation of the IOOperation via the {link #doOperation(Object)}, the DataAdapterUI can decide whether or not to actually use the DataAdapter to perform the operation. However, a correct implementation of this interface will use the DataAdapter given in setDataAdapter.

Specified by:

setDataAdapter in interface org.bdgp.io.DataAdapterUI

Overrides:

setDataAdapter in class org.bdgp.swing.AbstractDataAdapterUI

getSelectedServer

public java.lang.String getSelectedServer()

getSelectedDSN

public DASDsn getSelectedDSN()

This returns an actual DASDsn - either the source id or the MapMaster attribute will give the URL of the annotated source.

getSelectedSegment

public DASSegment getSelectedSegment()

getSelectedHistory

public java.lang.String getSelectedHistory()

updateDSNs

protected void updateDSNs()

updateSegments

protected void updateSegments()

doOperation

public java.lang.Object doOperation(java.lang.Object values)
                             throws org.bdgp.io.DataAdapterException

Description copied from interface: org.bdgp.io.DataAdapterUI

The method that actually performs the data adapter operation (presumably by delegating to a data adapter). The input and outputs to this method are entirely dependant on the operation the data adapter is supposed to perform. The input or output of this method may be null.

Specified by:

doOperation in interface org.bdgp.io.DataAdapterUI

Throws:

org.bdgp.io.DataAdapterException

setSelection

protected void setSelection(java.lang.Object item,
                            java.util.Vector model,
                            javax.swing.JComboBox list)

Sets the input model to be that of the list. Additionally, if the input list contains the item, then select it. Otherwise, add it into the list.

setSelectedDSNWithId

protected void setSelectedDSNWithId(java.lang.String id,
                                    java.util.Vector model,
                                    javax.swing.JComboBox list)

setSelectedSegmentWithId

protected void setSelectedSegmentWithId(java.lang.String id,
                                        java.util.Vector model,
                                        javax.swing.JComboBox list)