apollo.dataadapter.chado
Class ChadoTransactionTransformer

java.lang.Object
  apollo.dataadapter.chado.ChadoTransactionTransformer

All Implemented Interfaces:

TransactionTransformer

public class ChadoTransactionTransformer
extends java.lang.Object
implements TransactionTransformer

This class is used to translate Apollo Transaction objects to Chado Transaction objects.

Author:

wgm

Field Summary

protected static org.apache.log4j.Logger

logger

Constructor Summary

ChadoTransactionTransformer()

Method Summary

ChadoTransaction	createSrcFeatureIDTransaction(java.lang.String mapID, java.lang.String mapType)
java.lang.String	getPolypeptideType()
void	setChadoInstance(ChadoInstance instance)
void	setOneLevelAnnotTypes(java.util.List features)
void	setPolypeptideType(java.lang.String type)
void	setThreeLevelAnnotTypes(java.util.List features)
java.util.List	transform(TransactionManager transManager) I think the incoming List of transactions are apollo editor Transactions.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

logger

protected static final org.apache.log4j.Logger logger

Constructor Detail

ChadoTransactionTransformer

public ChadoTransactionTransformer()

Method Detail

transform

public java.util.List transform(TransactionManager transManager)
                         throws TransactionTransformException

I think the incoming List of transactions are apollo editor Transactions. These are transformed and the returned List is a list of Chado Transactions. This does not deal with CompoundTransactions. TransactionManager.coalesce flattens out compounds so we shouldnt see them here. If that changes then they need to be dealt with here.

Specified by:

transform in interface TransactionTransformer

Throws:

TransactionTransformException

setChadoInstance

public void setChadoInstance(ChadoInstance instance)

getPolypeptideType

public java.lang.String getPolypeptideType()

setPolypeptideType

public void setPolypeptideType(java.lang.String type)

createSrcFeatureIDTransaction

public ChadoTransaction createSrcFeatureIDTransaction(java.lang.String mapID,
                                                      java.lang.String mapType)

setOneLevelAnnotTypes

public void setOneLevelAnnotTypes(java.util.List features)

setThreeLevelAnnotTypes

public void setThreeLevelAnnotTypes(java.util.List features)