apollo.dataadapter
Class StateInformation

java.lang.Object
  java.util.Dictionary<K,V>
      java.util.Hashtable<java.lang.Object,java.lang.Object>
          java.util.Properties
              apollo.dataadapter.StateInformation

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable, java.util.Map<java.lang.Object,java.lang.Object>

public class StateInformation
extends java.util.Properties

Central class for state-information keys

See Also:

Serialized Form

Field Summary

static java.lang.String	ADD_RESULT_GENES_AS_ANNOTATIONS
static java.lang.String	ADD_TRANSCRIPT_SUPPORT
static java.lang.String	AGGRESSIVE_GENE_NAMING
java.util.Set	allowedSet
static java.lang.String	AUTHOR
static java.lang.String	AUTHOR_EMAIL
static java.lang.String	CONNECTION_STRING
static java.lang.String	DATA_ADAPTER
static java.lang.String	DATA_FILE_NAME
static java.lang.String	DATABASE
static java.lang.String	DSN_DESCRIPTION
static java.lang.String	DSN_MAP_MASTER
static java.lang.String	DSN_SOURCE
static java.lang.String	DSN_SOURCE_ID
static java.lang.String	DSN_SOURCE_VERSION
static java.lang.String	ENSEMBL_DRIVER
static java.lang.String	HOST
static java.lang.String	HTTP_PROXY_HOST
static java.lang.String	HTTP_PROXY_PORT
static java.lang.String	HTTP_PROXY_SET
static java.lang.String	INCLUDE_CONTIG_FEATURE
static java.lang.String	INCLUDE_CONTIG_FEATURE_TYPES
static java.lang.String	INCLUDE_DITAG_FEATURE
static java.lang.String	INCLUDE_DITAG_TYPES
static java.lang.String	INCLUDE_DNA_DNA_ALIGNMENT
static java.lang.String	INCLUDE_DNA_DNA_ALIGNMENT_TYPES
static java.lang.String	INCLUDE_DNA_PROTEIN_ALIGNMENT
static java.lang.String	INCLUDE_DNA_PROTEIN_ALIGNMENT_TYPES
static java.lang.String	INCLUDE_FEATURE
static java.lang.String	INCLUDE_FEATURE_TYPES
static java.lang.String	INCLUDE_GENE
static java.lang.String	INCLUDE_GENE_TYPES
static java.lang.String	INCLUDE_PREDICTION_TRANSCRIPT
static java.lang.String	INCLUDE_PREDICTION_TRANSCRIPT_TYPES
static java.lang.String	INCLUDE_REPEAT_FEATURE
static java.lang.String	INCLUDE_REPEAT_FEATURE_TYPES
static java.lang.String	INCLUDE_SIMPLE_PEPTIDE_FEATURE
static java.lang.String	INCLUDE_SIMPLE_PEPTIDE_FEATURE_TYPES
static java.lang.String	INCLUDE_VARIATION
static java.lang.String	INPUT_DATA_SET
static java.lang.String	INPUT_FILE_NAME
static java.lang.String	INPUT_ID
static java.lang.String	INPUT_SERVER_NAME
static java.lang.String	INPUT_STRING
static java.lang.String	INPUT_TYPE
static java.lang.String	JDBC_DRIVER
static java.lang.String	LOCK
static java.lang.String	LOGGING_FILE
static java.lang.String	NAME
static java.lang.String	OUTPUT_DATA_SET
static java.lang.String	OUTPUT_FILE_NAME
static java.lang.String	OUTPUT_SERVER_NAME
static java.lang.String	PASSWORD
static java.lang.String	PORT
static java.lang.String	REGION
static java.lang.String	RESET_GENE_START_AND_STOP
static java.lang.String	SCHEMA_VERSION
static java.lang.String	SEGMENT_ID
static java.lang.String	SEGMENT_LENGTH
static java.lang.String	SEGMENT_ORIENTATION
static java.lang.String	SEGMENT_SEGMENT
static java.lang.String	SEGMENT_START
static java.lang.String	SEGMENT_STOP
static java.lang.String	SEGMENT_SUBPARTS
static java.lang.String	SEQUENCE_FILE_NAME
static java.lang.String	SERVER_PORT
static java.lang.String	SERVER_URL
static java.lang.String	SIGNATURE
static java.lang.String	TYPE_PREFIX_STRING
static java.lang.String	USER

Fields inherited from class java.util.Properties

defaults

Constructor Summary

StateInformation()

Method Summary

java.lang.Object

setProperty(java.lang.String key, java.lang.String property)

Methods inherited from class java.util.Properties

getProperty, getProperty, list, list, load, loadFromXML, propertyNames, save, store, storeToXML, storeToXML

Methods inherited from class java.util.Hashtable

clear, clone, contains, containsKey, containsValue, elements, entrySet, equals, get, hashCode, isEmpty, keys, keySet, put, putAll, rehash, remove, size, toString, values

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

allowedSet

public java.util.Set allowedSet

REGION

public static final java.lang.String REGION

See Also:

Constant Field Values

LOGGING_FILE

public static final java.lang.String LOGGING_FILE

See Also:

Constant Field Values

INPUT_TYPE

public static final java.lang.String INPUT_TYPE

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Constant Field Values

INPUT_ID

public static final java.lang.String INPUT_ID

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Constant Field Values

INPUT_STRING

public static final java.lang.String INPUT_STRING

See Also:

Constant Field Values

DATA_ADAPTER

public static final java.lang.String DATA_ADAPTER

See Also:

Constant Field Values

INCLUDE_GENE

public static final java.lang.String INCLUDE_GENE

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Constant Field Values

INCLUDE_GENE_TYPES

public static final java.lang.String INCLUDE_GENE_TYPES

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Constant Field Values

INCLUDE_DNA_PROTEIN_ALIGNMENT

public static final java.lang.String INCLUDE_DNA_PROTEIN_ALIGNMENT

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Constant Field Values

INCLUDE_DNA_PROTEIN_ALIGNMENT_TYPES

public static final java.lang.String INCLUDE_DNA_PROTEIN_ALIGNMENT_TYPES

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Constant Field Values

INCLUDE_DNA_DNA_ALIGNMENT

public static final java.lang.String INCLUDE_DNA_DNA_ALIGNMENT

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Constant Field Values

INCLUDE_DNA_DNA_ALIGNMENT_TYPES

public static final java.lang.String INCLUDE_DNA_DNA_ALIGNMENT_TYPES

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Constant Field Values

INCLUDE_FEATURE

public static final java.lang.String INCLUDE_FEATURE

See Also:

Constant Field Values

INCLUDE_FEATURE_TYPES

public static final java.lang.String INCLUDE_FEATURE_TYPES

See Also:

Constant Field Values

INCLUDE_DITAG_FEATURE

public static final java.lang.String INCLUDE_DITAG_FEATURE

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Constant Field Values

INCLUDE_DITAG_TYPES

public static final java.lang.String INCLUDE_DITAG_TYPES

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Constant Field Values

INCLUDE_SIMPLE_PEPTIDE_FEATURE

public static final java.lang.String INCLUDE_SIMPLE_PEPTIDE_FEATURE

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Constant Field Values

INCLUDE_SIMPLE_PEPTIDE_FEATURE_TYPES

public static final java.lang.String INCLUDE_SIMPLE_PEPTIDE_FEATURE_TYPES

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Constant Field Values

INCLUDE_REPEAT_FEATURE

public static final java.lang.String INCLUDE_REPEAT_FEATURE

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Constant Field Values

INCLUDE_REPEAT_FEATURE_TYPES

public static final java.lang.String INCLUDE_REPEAT_FEATURE_TYPES

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Constant Field Values

INCLUDE_CONTIG_FEATURE

public static final java.lang.String INCLUDE_CONTIG_FEATURE

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Constant Field Values

INCLUDE_CONTIG_FEATURE_TYPES

public static final java.lang.String INCLUDE_CONTIG_FEATURE_TYPES

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Constant Field Values

INCLUDE_PREDICTION_TRANSCRIPT

public static final java.lang.String INCLUDE_PREDICTION_TRANSCRIPT

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Constant Field Values

INCLUDE_PREDICTION_TRANSCRIPT_TYPES

public static final java.lang.String INCLUDE_PREDICTION_TRANSCRIPT_TYPES

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Constant Field Values

INCLUDE_VARIATION

public static final java.lang.String INCLUDE_VARIATION

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Constant Field Values

RESET_GENE_START_AND_STOP

public static final java.lang.String RESET_GENE_START_AND_STOP

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Constant Field Values

AGGRESSIVE_GENE_NAMING

public static final java.lang.String AGGRESSIVE_GENE_NAMING

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Constant Field Values

ADD_RESULT_GENES_AS_ANNOTATIONS

public static final java.lang.String ADD_RESULT_GENES_AS_ANNOTATIONS

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Constant Field Values

ADD_TRANSCRIPT_SUPPORT

public static final java.lang.String ADD_TRANSCRIPT_SUPPORT

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Constant Field Values

TYPE_PREFIX_STRING

public static final java.lang.String TYPE_PREFIX_STRING

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Constant Field Values

JDBC_DRIVER

public static final java.lang.String JDBC_DRIVER

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Constant Field Values

HOST

public static final java.lang.String HOST

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Constant Field Values

PORT

public static final java.lang.String PORT

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Constant Field Values

USER

public static final java.lang.String USER

See Also:

Constant Field Values

PASSWORD

public static final java.lang.String PASSWORD

See Also:

Constant Field Values

ENSEMBL_DRIVER

public static final java.lang.String ENSEMBL_DRIVER

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Constant Field Values

SIGNATURE

public static final java.lang.String SIGNATURE

See Also:

Constant Field Values

DATABASE

public static final java.lang.String DATABASE

See Also:

Constant Field Values

NAME

public static final java.lang.String NAME

See Also:

Constant Field Values

CONNECTION_STRING

public static final java.lang.String CONNECTION_STRING

See Also:

Constant Field Values

SCHEMA_VERSION

public static final java.lang.String SCHEMA_VERSION

See Also:

Constant Field Values

INPUT_FILE_NAME

public static final java.lang.String INPUT_FILE_NAME

See Also:

Constant Field Values

OUTPUT_FILE_NAME

public static final java.lang.String OUTPUT_FILE_NAME

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Constant Field Values

INPUT_SERVER_NAME

public static final java.lang.String INPUT_SERVER_NAME

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Constant Field Values

SERVER_PORT

public static final java.lang.String SERVER_PORT

See Also:

Constant Field Values

OUTPUT_SERVER_NAME

public static final java.lang.String OUTPUT_SERVER_NAME

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Constant Field Values

INPUT_DATA_SET

public static final java.lang.String INPUT_DATA_SET

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Constant Field Values

OUTPUT_DATA_SET

public static final java.lang.String OUTPUT_DATA_SET

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Constant Field Values

AUTHOR

public static final java.lang.String AUTHOR

See Also:

Constant Field Values

AUTHOR_EMAIL

public static final java.lang.String AUTHOR_EMAIL

See Also:

Constant Field Values

LOCK

public static final java.lang.String LOCK

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Constant Field Values

SERVER_URL

public static final java.lang.String SERVER_URL

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Constant Field Values

DSN_SOURCE_ID

public static final java.lang.String DSN_SOURCE_ID

See Also:

Constant Field Values

DSN_SOURCE_VERSION

public static final java.lang.String DSN_SOURCE_VERSION

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Constant Field Values

DSN_SOURCE

public static final java.lang.String DSN_SOURCE

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Constant Field Values

DSN_MAP_MASTER

public static final java.lang.String DSN_MAP_MASTER

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Constant Field Values

DSN_DESCRIPTION

public static final java.lang.String DSN_DESCRIPTION

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Constant Field Values

SEGMENT_SEGMENT

public static final java.lang.String SEGMENT_SEGMENT

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Constant Field Values

SEGMENT_ID

public static final java.lang.String SEGMENT_ID

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Constant Field Values

SEGMENT_START

public static final java.lang.String SEGMENT_START

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Constant Field Values

SEGMENT_STOP

public static final java.lang.String SEGMENT_STOP

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Constant Field Values

SEGMENT_ORIENTATION

public static final java.lang.String SEGMENT_ORIENTATION

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Constant Field Values

SEGMENT_SUBPARTS

public static final java.lang.String SEGMENT_SUBPARTS

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Constant Field Values

SEGMENT_LENGTH

public static final java.lang.String SEGMENT_LENGTH

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Constant Field Values

HTTP_PROXY_SET

public static final java.lang.String HTTP_PROXY_SET

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Constant Field Values

HTTP_PROXY_HOST

public static final java.lang.String HTTP_PROXY_HOST

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Constant Field Values

HTTP_PROXY_PORT

public static final java.lang.String HTTP_PROXY_PORT

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Constant Field Values

DATA_FILE_NAME

public static final java.lang.String DATA_FILE_NAME

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Constant Field Values

SEQUENCE_FILE_NAME

public static final java.lang.String SEQUENCE_FILE_NAME

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Constant Field Values

Constructor Detail

StateInformation

public StateInformation()

Method Detail

setProperty

public java.lang.Object setProperty(java.lang.String key,
                                    java.lang.String property)

Overrides:

setProperty in class java.util.Properties