apollo.dataadapter
Class DataInputType

java.lang.Object
  apollo.dataadapter.DataInputType

public class DataInputType
extends java.lang.Object

A value class for the different types of Data input

Nested Class Summary

static class

DataInputType.UnknownTypeException

Field Summary

static DataInputType	BASEPAIR_RANGE
static DataInputType	CONTIG
static DataInputType	CYTOLOGY
static DataInputType	DIR
static DataInputType	FILE
static DataInputType	GENE
static DataInputType	MRNA
static DataInputType	SCAFFOLD
static DataInputType	SEQUENCE
static DataInputType	URL

Method Summary

static DataInputType	getDataTypeForSoType(java.lang.String soType) This is an attempt to correlate SO terms with DataInputType.
java.lang.String	getSoType()
static java.lang.String[]	getTypeStrings()
boolean	isLocation()
static DataInputType	stringToType(java.lang.String s)
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

GENE

public static DataInputType GENE

MRNA

public static DataInputType MRNA

CYTOLOGY

public static DataInputType CYTOLOGY

SCAFFOLD

public static DataInputType SCAFFOLD

FILE

public static DataInputType FILE

URL

public static DataInputType URL

SEQUENCE

public static DataInputType SEQUENCE

BASEPAIR_RANGE

public static DataInputType BASEPAIR_RANGE

CONTIG

public static DataInputType CONTIG

DIR

public static DataInputType DIR

Method Detail

getDataTypeForSoType

public static DataInputType getDataTypeForSoType(java.lang.String soType)

This is an attempt to correlate SO terms with DataInputType. The 2 should work hand in hand, until all adapters are using SO, then we can scrap DataInputType for SO. Only handles chromosome at the moment. This should be derived from SO, or at least configured, hardwiring for now

getSoType

public java.lang.String getSoType()

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

stringToType

public static DataInputType stringToType(java.lang.String s)
                                  throws DataInputType.UnknownTypeException

Throws:

DataInputType.UnknownTypeException

isLocation

public boolean isLocation()

getTypeStrings

public static java.lang.String[] getTypeStrings()